Basic Information
VIS ID
TVIS30000420
Fusion event
HIV-LOC101928565 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
168448029/168478791 (Hg38)
End
168448029/168478791 (Hg38)
Location type
Intronic
Target gene
LOC101928565
Nearest miRNA
hsa-mir-101-1/Upstream/103170; hsa-mir-1182/Downstream/1672587;
Nearest TSS
ENST00000473358/Upstream/56135; ENST00000367818/Downstream/16853;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/252190, chr1-CpG: 153/Downstream/626737
Nearby gene
LOC100505918(-56135) ;
Upstream sequence
aacaggcaagcagagagtcaaatcatgaatgaactcccattcacaattgctacaaaaagaataaaatacctaggaatacacttaacaagggaaatgaagg
Downstream sequence
acctcttcaaggagaactacaaaccactgctccaagaaatcagagaggacacaaataaatggaaaaacattccattccatgctcatcgaaaggaagaatc
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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