Basic Information
VIS ID
TVIS30000421
Fusion event
HIV-LOC107985242 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
194175208/194206078 (Hg38)
End
194175208/194206078 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1K
Target gene
LOC107985242
Nearest miRNA
hsa-mir-101-1/Upstream/1069495; hsa-mir-1182/Downstream/2376335;
Nearest TSS
ENST00000473358/Upstream/56605; ENST00000435554/Downstream/144865;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1083984, chr1-CpG: 24/Downstream/2402500
Upstream sequence
ttcagtcctCATCTCCTGGAAAACATATCATCACTCAAGAGCACTTCACAATAGTCCCTTTAAAAACAGGATATTCTTATTCTTTTTTATTTTTTTTCAC
Downstream sequence
CTAAGgtgattcttggaatgttgcctcagagccagtggggtctccaaagatcctttcagaggatttgcaaggtcaaaatattttcacagcaatagtaatc
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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