Basic Information
VIS ID
TVIS30000422
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
199434782/199465654 (Hg38)
End
199434782/199465654 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/606501; hsa-mir-1182/Downstream/2253854;
Nearest TSS
ENST00000473358/Upstream/317056; ENST00000447034/Downstream/561948;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1306420, chr1-CpG: 36/Downstream/569692
Nearby gene
LINC01222(No orient, 446689)
Upstream sequence
aggaagagagacaggagggcaggacaaggtcagaggaaaacttggcctctaaggctgcttctgaggcctttactttgtggtatcatttcctgagccccaa
Downstream sequence
caGTAACCATACACAGAAAAAAGTGGGAGGGAGTGGAAGCATAGGAAAGCACATGAAAAGTGTGAAAGTGTAATAGATCAGTAATTCACATATTTAAAGA
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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