Basic Information
VIS ID
TVIS30000425
Fusion event
HIV-BABAM2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr2
Cytoband
p23.2
Reference genome
GRCh37/hg19
Start
28325877/28103010 (Hg38)
End
28325877/28103010 (Hg38)
Orient
+
Location type
Intronic
Target gene
BABAM2
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-1301/Upstream/106561; hsa-mir-10b/Downstream/4429143;
Nearest TSS
ENST00000437798/Upstream/208390; ENST00000460736/Downstream/207449;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/212113, chr2-CpG: 302/Downstream/287087
Upstream sequence
ATAATGATTTTATATAGGAATCATGTAATAAAATAATGATTTTACAAACTGAATTATGTCAGTTTGAGTAATCTATAAACGGCCTATAGTTTTTTGTTTT
Downstream sequence
GTTTTATGAGGAGGGTTTCCTTTATCCTTTTCATAAAATGCTGAAAGTAATTATATGGTCCTGATGTGATATCTTTCATTTTAGAGTATTTGTTTTTTGG
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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