VISDB Viral Integration Site DataBase

VIS ID

TVIS30000427

Fusion event

HIV-ANKRD36 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HIV

Reference genome

Chromosome

chr2

Cytoband

q11.2

Reference genome

Start

End

97866505/97200768 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA2S ; FRA2A

Target gene

miRNAs that regulate target gene

hsa-mir-6079 ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-7515 ; hsa-mir-3154 ; hsa-mir-4661-5p ; hsa-mir-376c-3p ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-182-5p ; hsa-mir-183-5p ; hsa-mir-2355-5p ; hsa-mir-593-5p ; hsa-mir-6849-3p ; hsa-mir-3976 ; hsa-mir-6838-5p ; hsa-mir-4274 ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-2278 ; hsa-mir-640 ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-6131 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-3663-5p ; hsa-mir-4793-3p ; hsa-mir-3653-5p ; hsa-mir-6513-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-5698 ; hsa-mir-1178-3p ; hsa-mir-6794-3p ; hsa-mir-891a-3p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-564 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-3934-3p ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-5693 ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-4639-3p ; hsa-mir-3155a ; hsa-mir-3664-5p

Nearest miRNA

hsa-mir-1285-2/Upstream/402415; hsa-mir-10b/Downstream/4108682;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/86965, chr2-CpG: 113/Downstream/388889

Upstream sequence

tatgctgatgctgcttgtctgcagCATGATCTTCGCTGTAAGATTATACGCATCCCCACATTACAATTGGGAGGAAGAAACATGGAGAGCAGTTGAAGAC

Downstream sequence

ATAAGGGGCTCTGGGGCCCAGCATAATTTTGCTTTAATTCTGTAGCATCTTTTCATTAAGGGTGTAAGGAGAAAGAGAGGAAGTACAGATTTTACAGACG