Basic Information
VIS ID
TVIS30000429
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr2
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
119145161/118387585 (Hg38)
End
119145161/118387585 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/4666217; hsa-mir-10b/Downstream/9035952;
Nearest TSS
ENST00000437798/Upstream/201199; ENST00000412481/Downstream/447024;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/162695, chr2-CpG: 29/Downstream/386904
Nearby gene
LOC101927709(No orient, 212198)
Upstream sequence
TGCATTCATGGTACCCCCTTCTCTCGGCAGGGCTGGACTTCCTGCTGGATTGACCTCACAAGAGGATAGACAGAGGAGAGGGCATCACCTACAGATGGCC
Downstream sequence
CTGCTGACAGTCCATGAGCTGATAGCTCATCAGTTGCTTTTCTTAGGGCCAGACTTTCCCATGACTTGGCATTTTTATTCATCTTTAATTCTGAGGGTTC
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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