Basic Information
VIS ID
TVIS30000444
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr3
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
81181871/81132720 (Hg38)
End
81181871/81132720 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/1624751; hsa-mir-12124/Downstream/4252990;
Nearest TSS
ENST00000440867/Upstream/138852; ENST00000471614/Downstream/76194;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1365970, chr3-CpG: 75/Downstream/628444
Nearby gene
GBE1(-356979) ;
Upstream sequence
TTTATTCTATGTCATTAAATTTTAAACATATCTTAGCCTTTTGATTATTGTTTACAAATTTGTTCTGCTTTCGCCATTTTACTCCAATTACTTTACTGTA
Downstream sequence
TGTATGGTTGTTACTATTATTATTTGCAACTGGCATTCAAGTTTAAGGAATAAAAGAAAAACAAATATTTTGGTTGTAAAGCTCtgtgtgtgtgtgtgtg
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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