Basic Information
VIS ID
TVIS30000446
Fusion event
HIV-GUCA1C integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr3
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
108649768/108930921 (Hg38)
End
108649768/108930921 (Hg38)
Orient
-
Location type
Intronic
Target gene
GUCA1C
Nearest miRNA
hsa-let-7g/Upstream/5406805; hsa-mir-12124/Downstream/671907;
Nearest TSS
ENST00000440867/Upstream/108062; ENST00000480826/Downstream/22841;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/341164, chr3-CpG: 28/Downstream/187027
Upstream sequence
CTTTATTAATCCCTAGCAGAGCTATGACTGAGACAAGCGAAATATGTTATTATAGGGTTGAAATTTATTTAAGATGACAACGAGGTATCATATCTCCAGA
Downstream sequence
TTGAGCAGGACATGACCATTATTTTTCAGAAACAGGTCTGGAAGTGTGGATGAAATAAGCTGAATGGACAGTATCCAACCAGAGGTACATTTACTCCCAG
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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