Basic Information
VIS ID
TVIS30000452
Fusion event
HIV-RASA2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr3
Cytoband
q23
Reference genome
GRCh37/hg19
Start
141238172/141519330 (Hg38)
End
141238172/141519330 (Hg38)
Orient
+
Location type
Intronic
Target gene
RASA2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-182-5p ; hsa-mir-203a-3p ; hsa-mir-4470 ; hsa-mir-3973 ; hsa-mir-4635 ; hsa-mir-548l
Nearest miRNA
hsa-let-7g/Upstream/7081424; hsa-mir-1224/Downstream/10046546;
Nearest TSS
ENST00000440867/Upstream/32246; ENST00000505833/Downstream/59194;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/31412, chr3-CpG: 56/Downstream/140546
Upstream sequence
tcatgggcataaccattttaccaccccctggccattcttgcatattatcattgaaaaaaatttgccaatatgataggtgaaaaataacacattattattt
Downstream sequence
taatgtgtgttttctgattttgaaggaatttgaggaatttttcatatgtttattggtatttacatttttcttctgtgaattgattgctcattcctttgcc
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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