Basic Information
VIS ID
TVIS30000453
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr3
Cytoband
q24
Reference genome
GRCh37/hg19
Start
147546558/147828771 (Hg38)
End
147546558/147828771 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/13390865; hsa-mir-1224/Downstream/3737105;
Nearest TSS
ENST00000440867/Upstream/320830; ENST00000467198/Downstream/17886;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/404167, chr3-CpG: 56/Downstream/868884
Nearby gene
LOC440982(No orient, 318861)
Upstream sequence
tagggagattttagattttttatgcataatctagagaatttgagcaacatttggataaaataggaatgaaaagttagatgcaagaaagaatcacagttca
Downstream sequence
ttgtataggacgcaggtgggttgcacttgccatttactgagagaaaaagaatgagagaagaTTTTGGGTGGTGGAGGCAGTGTGGTCTATTTTGTAACTT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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