Basic Information
VIS ID
TVIS30000454
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr3
Cytoband
q27.3
Reference genome
GRCh37/hg19
Start
187615232/187897444 (Hg38)
End
187615232/187897444 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA3C
Nearest miRNA
hsa-let-7g/Upstream/1110667; hsa-mir-28/Downstream/791337;
Nearest TSS
ENST00000440867/Upstream/101189; ENST00000449845/Downstream/48777;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/152507, chr3-CpG: 27/Downstream/256246
Nearby gene
BCL6(-151719) ;
Nearest cancer related gene
BCL6(OG, -151719) ;
Upstream sequence
CCAATAAAAGCAGTCCACttttctgaatgcccaccacatgccaagtgccaagtacttcacataccttgtttcttttaattcacacaaTGAATGACCCGAG
Downstream sequence
GAGAACGCTCAACTAACAACCATGTACTTGAACCAGGGGTTTAAATCAGTCATACACACAGCAGGATTTAAATACTATCTTCCACATGGTACCTTCAGAA
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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