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TVIS30000455
Basic Information
VIS ID
TVIS30000455
Fusion event
HIV-LPP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr3
Cytoband
q28
Reference genome
GRCh37/hg19
Start
188211722/188493934 (Hg38)
End
188211722/188493934 (Hg38)
Orient
-
Location type
Intronic
Target gene
LPP
miRNAs that regulate target gene
hsa-mir-124-3p
;
hsa-mir-142-3p
;
hsa-mir-758-5p
;
hsa-mir-3190-3p
;
hsa-mir-548aw
;
hsa-mir-6079
;
hsa-mir-4762-3p
;
hsa-mir-527
;
hsa-mir-518a-5p
;
hsa-mir-4452
;
hsa-mir-376a-5p
;
hsa-mir-3192-3p
;
hsa-mir-4684-3p
;
hsa-mir-656-5p
;
hsa-mir-4502
;
hsa-mir-4680-3p
;
hsa-mir-5187-3p
;
hsa-mir-4427
;
hsa-mir-491-3p
;
hsa-mir-7156-3p
;
hsa-mir-514b-5p
;
hsa-mir-513c-5p
;
hsa-mir-372-5p
;
hsa-mir-371a-5p
;
hsa-mir-616-5p
;
hsa-mir-373-5p
;
hsa-mir-371b-5p
;
hsa-mir-4729
;
hsa-mir-641
;
hsa-mir-3617-5p
;
hsa-mir-4752
;
hsa-mir-620
;
hsa-mir-3911
;
hsa-mir-1270
;
hsa-mir-7847-3p
;
hsa-mir-4697-3p
;
hsa-mir-4683
;
hsa-mir-4289
;
hsa-mir-4302
;
hsa-mir-6733-3p
;
hsa-mir-574-5p
;
hsa-mir-297
;
hsa-mir-6867-5p
;
hsa-mir-223-5p
;
hsa-mir-567
;
hsa-mir-3650
;
hsa-mir-4455
;
hsa-mir-6747-5p
;
hsa-mir-511-3p
;
hsa-mir-6782-5p
;
hsa-mir-3936
;
hsa-mir-6820-3p
;
hsa-mir-3164
;
hsa-mir-4765
;
hsa-mir-1236-5p
;
hsa-mir-3174
;
hsa-mir-195-3p
;
hsa-mir-16-2-3p
;
hsa-mir-6833-3p
;
hsa-mir-4768-5p
;
hsa-mir-4753-3p
;
hsa-mir-6873-3p
;
hsa-mir-6505-3p
;
hsa-mir-617
;
hsa-mir-627-3p
;
hsa-mir-942-5p
;
hsa-mir-6817-3p
;
hsa-mir-7110-3p
;
hsa-mir-4662b
;
hsa-mir-4647
;
hsa-mir-4426
;
hsa-mir-129-5p
;
hsa-mir-8055
;
hsa-mir-6864-3p
;
hsa-mir-3672
;
hsa-mir-6726-3p
;
hsa-mir-4294
;
hsa-mir-130b-5p
;
hsa-mir-6812-3p
;
hsa-mir-664a-5p
;
hsa-mir-4794
;
hsa-mir-8073
;
hsa-mir-221-5p
;
hsa-mir-4793-5p
;
hsa-mir-4433a-3p
;
hsa-mir-4459
;
hsa-mir-4768-3p
;
hsa-mir-15a-3p
;
hsa-mir-6888-5p
;
hsa-mir-141-3p
;
hsa-mir-200a-3p
;
hsa-mir-1265
;
hsa-mir-191-5p
;
hsa-mir-2392
;
hsa-mir-4327
;
hsa-mir-4537
;
hsa-mir-455-3p
;
hsa-mir-4740-3p
;
hsa-mir-4742-5p
;
hsa-mir-5093
;
hsa-mir-5186
;
hsa-mir-6499-3p
;
hsa-mir-6516-5p
;
hsa-mir-7846-3p
;
hsa-mir-1827
;
hsa-mir-19a-5p
;
hsa-mir-19b-1-5p
;
hsa-mir-19b-2-5p
;
hsa-mir-2052
;
hsa-mir-3929
;
hsa-mir-4419b
;
hsa-mir-4478
;
hsa-mir-4666a-3p
;
hsa-mir-4709-3p
;
hsa-mir-4722-5p
;
hsa-mir-485-5p
;
hsa-mir-665
;
hsa-mir-6746-5p
;
hsa-mir-6771-5p
;
hsa-mir-6808-5p
;
hsa-mir-6884-5p
;
hsa-mir-6893-5p
;
hsa-mir-7160-5p
;
hsa-mir-7849-3p
;
hsa-mir-940
Nearest miRNA
hsa-let-7g/Upstream/1707157; hsa-mir-28/Downstream/194847;
Nearest TSS
ENST00000440867/Upstream/9344;
ENST00000462758/Downstream/74216;
Nearest CpG islands
None/Target,
chr3-CpG: 148/Upstream/339368
,
chr3-CpG: 25/Downstream/453552
Upstream sequence
CTTCTCTATTCTTCATATTAGTTTTCTTTTTCCAATAGTTCTACTACATGGAGGGATTTCTGTTGCTTACTTCCCTTTTATATTCTTAATTTTTGTGGTG
Downstream sequence
ATAGTCTGCTTTTGACTTATAAATGCTCTATAAAACTGAATTTGGGGAGAGTATTTGGTAGGAGTGGCTCTGGATATCTGTTGTTCAGGGTAGCTAGCTT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Sample Information
×
Sample name
ACH-2 Bulk Culture
Sample type
Cell line
Gender
Female
CpG Island Information
×
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