Basic Information
VIS ID
TVIS30000458
Fusion event
HIV-TAPT1-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr4
Cytoband
p15.32
Reference genome
GRCh37/hg19
Start
16252727/16251104 (Hg38)
End
16252727/16251104 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA4D
Target gene
TAPT1-AS1
Nearest miRNA
hsa-mir-12113/Upstream/2623147; hsa-mir-12115/Downstream/4277171;
Nearest TSS
ENST00000502981/Upstream/23694; ENST00000511818/Downstream/149326;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/23582, chr4-CpG: 26/Downstream/5220
Upstream sequence
ACATCTTTGCTGCTgacttttacccctgctttctcctaaattactctcccaaaggtcaccaaaggaccacgtggtcatcacatttgatgaccttctctcc
Downstream sequence
atttttaccctccttaacctctctgtgtttgatattgtcaaccactgtccctttcatgagtccctgtttccatggcgatggtgacattgtactcttccag
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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