Basic Information
VIS ID
TVIS30000461
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr4
Cytoband
q28.3
Reference genome
GRCh37/hg19
Start
134206344/133285189 (Hg38)
End
134206344/133285189 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/7777882; hsa-mir-1305/Downstream/10058271;
Nearest TSS
ENST00000502981/Upstream/130296; ENST00000503009/Downstream/725501;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/132716, chr4-CpG: 21/Downstream/1659036
Nearby gene
PCDH10(+93612) ;
Nearest cancer related gene
PCDH10(TSG, +93612) ;
Upstream sequence
tgtcttcatgtcctttgctcattttttagcgaggttgtttgttcttgctgtttgtttcagttctttatagagttgcatattagacctttgtcaaatgtat
Downstream sequence
agtttgcaaatattttctcccattctgtaggttgtccatgtactctgttgatagtttatcttgctgtgcagaaacgctttagtgtaacaaggtcccattt
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate