Basic Information
VIS ID
TVIS30000462
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr4
Cytoband
q28.3
Reference genome
GRCh37/hg19
Start
134721272/133800117 (Hg38)
End
134721272/133800117 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/8292810; hsa-mir-1305/Downstream/9543343;
Nearest TSS
ENST00000502981/Upstream/645224; ENST00000503009/Downstream/210573;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/647644, chr4-CpG: 21/Downstream/1144108
Nearby gene
PABPC4L(-396217) ;
Upstream sequence
TTAGTTTAAAACAAAAATTAATACTGCTTCCTCATCCCATAAACTCTTGAGCTAGACTCTCCAGGGACAAAAGAGGAAAGACTCAAACAGACAAAACTTG
Downstream sequence
GTTACCACTGATAATAATCCTCGGAGATGTGTTCCCGGTTATTTGGACTTTTGCCATGAATACATCACTAAAAGTTGGAAGTAGCATGGTTTCCTCCAGC
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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