Basic Information
VIS ID
TVIS30000464
Fusion event
HIV-LOC101928383 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr4
Cytoband
q34.1
Reference genome
GRCh37/hg19
Start
174305720/173384569 (Hg38)
End
174305720/173384569 (Hg38)
Location type
Intronic
Target gene
LOC101928383
Nearest miRNA
hsa-mir-12113/Upstream/116336; hsa-mir-1305/Downstream/1039226;
Nearest TSS
ENST00000502981/Upstream/13626; ENST00000505032/Downstream/14967;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/12447, chr4-CpG: 21/Downstream/115627
Nearby gene
SCRG1(-3579) ;
Upstream sequence
ATATTTTACAAAAAATGATTTATTATGGAAATAACTTACATGTACCTTTTGATAATTATAAGGACATTAAAGTCGCAAAGTGATCTGTGAATGTTCCTAC
Downstream sequence
CTTGTCTTTTTTTTCCCCCAATAGTTGTTGCTCATTGTTTTGGTTCTCCATCTTCCTTCCAATTCTCTAATAATCCTTTAGGATCAGTACCTAATCCCAG
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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