Basic Information
VIS ID
TVIS30000465
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr4
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
180758749/179837596 (Hg38)
End
180758749/179837596 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/5413732; hsa-mir-1305/Downstream/2331697;
Nearest TSS
ENST00000502981/Upstream/372291; ENST00000512480/Downstream/921442;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/2395042, chr4-CpG: 160/Downstream/220289
Nearby gene
LINC00290(-1226494) ;
Upstream sequence
AATCTTTTTTATTATTAATAGGGCCCAAATCTATGTTCTGTGATCCTAATTATGGTGGAAAAAAACATAGAACTCtcaaggaacaggcagccggttagtg
Downstream sequence
tggcgcacaagcagagactgagcaggaaagtgggagccggcagtgcaggtggaaagaacacagaagagaaattttgtgatcaggattttgggttttatta
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate