Basic Information
VIS ID
TVIS30000466
Fusion event
HIV-chr4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr4
Cytoband
q35.2
Reference genome
GRCh37/hg19
Start
188215027/187293873 (Hg38)
End
188215027/187293873 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2355433;
Nearest TSS
ENST00000502981/Upstream/91840; ENST00000509058/Downstream/15809;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/229554, chr4-CpG: 20/Downstream/69161
Nearby gene
LOC339975(-10210) ;
Upstream sequence
gaaccaagtatactgtgtattaacaggtcaatattacaaataaagaaacaaagtctcacaggtgcatttcagttacctgcatggccacaaaaccaggagt
Downstream sequence
agtaatggagtcagcatttattctacattggtctgacttcagcaactgcattcttccAAATAAAGCAGTTAATAATAAAATAATACAAATAACTGGTAAA
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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