VISDB Viral Integration Site DataBase

VIS ID

TVIS30000474

Fusion event

HIV-chr5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HIV

Reference genome

Chromosome

chr5

Cytoband

q15

Reference genome

Start

End

95058107/95722403 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

RHOBTB3 ; SPATA9

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-124-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-98-5p ; hsa-mir-432-5p ; hsa-mir-377-3p ; hsa-mir-6802-5p ; hsa-mir-4536-5p ; hsa-mir-6832-5p ; hsa-mir-4451 ; hsa-mir-379-5p ; hsa-mir-3529-5p ; hsa-mir-4650-3p ; hsa-mir-7153-5p ; hsa-mir-146b-5p ; hsa-mir-146a-5p ; hsa-mir-342-3p ; hsa-mir-6865-5p ; hsa-mir-6815-5p ; hsa-mir-3123 ; hsa-mir-3925-5p ; hsa-mir-6768-5p ; hsa-mir-664b-5p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-624-3p ; hsa-mir-1303 ; hsa-mir-3149 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-653-3p ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-411-5p ; hsa-mir-4775 ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-2052 ; hsa-mir-193b-5p ; hsa-mir-4735-5p ; hsa-mir-1208 ; hsa-mir-6760-3p ; hsa-mir-483-5p ; hsa-mir-892c-3p ; hsa-mir-4676-3p ; hsa-mir-452-5p ; hsa-mir-590-3p ; hsa-mir-7154-5p ; hsa-mir-5007-3p ; hsa-mir-4664-5p ; hsa-mir-342-5p ; hsa-mir-4999-5p ; hsa-mir-4718 ; hsa-mir-1537-5p ; hsa-mir-6847-3p ; hsa-mir-8060 ; hsa-mir-135a-3p ; hsa-mir-6782-5p ; hsa-mir-4760-3p

Nearest miRNA

hsa-mir-10397/Upstream/2101615; hsa-mir-103a-1/Downstream/356735;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/75413, chr5-CpG: 121/Downstream/8593

Nearby gene

RHOBTB3(+8743) ;

Upstream sequence

TTGTTGGAAAGAAGATATACCAGCAAAGTATTATACCACTTAACTCTAACATACTGTATTTCTGTATGATTACAAATGGAAAACTTCCAAAAAATTATGC

Downstream sequence

ATAACTGCATAATACACAATCAATGGTGCTTGATAATAATACTTGTATTTATTTATATACATCCCTGGGGGTGGTATTTTATAATGTAAAAGAGGttttt