Basic Information
VIS ID
TVIS30000476
Fusion event
HIV-chr5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr5
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
100647070/101311366 (Hg38)
End
100647070/101311366 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA5F
Nearest miRNA
hsa-mir-10397/Upstream/494801; hsa-mir-103a-1/Downstream/9202463;
Nearest TSS
ENST00000502646/Upstream/408100; ENST00000506058/Downstream/832711;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/407932, chr5-CpG: 26/Downstream/985080
Nearby gene
ST8SIA4(-408081) ;
Upstream sequence
ATTTTAATTCAATTATTTTCTGCATCTTTAAGTTATAATATTTATATCATGAATTTCACCTATAAAATTGTGCTTTGTATCTCTATACAAACTGAATTAG
Downstream sequence
CTGGACAGGTCTTCATTTTAGCTTTTTAAAATTATAATGAGGGGAAAGTGACAGAAAAGACCAATGGAACCAGTGAACTTAAAGGAACAAAATCATTTTT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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