Basic Information
VIS ID
TVIS30000481
Fusion event
HIV-LOC105377961 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr6
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
115805235/115484071 (Hg38)
End
115805235/115484071 (Hg38)
Location type
Intronic
Target gene
LOC105377961
Nearest miRNA
hsa-mir-10398/Upstream/8699851; hsa-mir-1202/Downstream/3584976;
Nearest TSS
ENST00000381078/Upstream/948196; ENST00000417846/Downstream/150120;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1140376, chr6-CpG: 74/Downstream/616439
Nearby gene
FRK(-457458) ;
Upstream sequence
TGGATCAGACACATCTTTCTTCTCTCTAGGTGCTTCCAACTGTTCAGATCTCAGATACAGAGGGATATATCATTATAGAGCTTGCCAAATCTGACACTCC
Downstream sequence
TTATTCATGGGCAGGTCAGAATTGTCATGAATCTCAAAACGTAACATCTTATTTATATGTTTTATATAGAGGTATCATAACGttaaaataatttttatat
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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