Basic Information
VIS ID
TVIS30000490
Fusion event
HIV-LOC101928451 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr7
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
128196939/128556885 (Hg38)
End
128196939/128556885 (Hg38)
Location type
Intronic
Target gene
LOC101928451
Nearest miRNA
hsa-mir-10525/Upstream/348942; hsa-mir-10399/Downstream/1213498;
Nearest TSS
ENST00000635602/Upstream/25816; ENST00000605836/Downstream/110158;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/24568, chr7-CpG: 61/Downstream/182175
Nearby gene
METTL2B(+53961) ;
Upstream sequence
GGATTAAAGAACattaatttgttcataagcatgtctttataaacatctatgtagtagatactgtgctagggatatagtagtaaataaaaacattgacccg
Downstream sequence
tgccctcataaaatttataatctaatggAAATTGAAAGGAGAAATAAATGTAGGGCCTCAGTTTCCGGCTTTGGCTTAACttttttttttttttttgaga
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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