VISDB Viral Integration Site DataBase

VIS ID

TVIS30000494

Fusion event

HIV-PCMTD1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HIV

Reference genome

Chromosome

chr8

Cytoband

q11.23

Reference genome

Start

End

52746047/51833487 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-190a-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-643 ; hsa-mir-5011-5p ; hsa-mir-3120-3p ; hsa-mir-1277-5p ; hsa-mir-137 ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-4252 ; hsa-mir-7977 ; hsa-mir-4691-3p ; hsa-mir-3618 ; hsa-mir-1283 ; hsa-mir-4709-5p ; hsa-mir-8062 ; hsa-mir-3065-5p ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-3121-3p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-548n ; hsa-mir-3161 ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-9-3p ; hsa-mir-34c-3p ; hsa-mir-4429 ; hsa-mir-320d ; hsa-mir-320c ; hsa-mir-320b ; hsa-mir-320a ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p

Nearest miRNA

hsa-mir-124-1/Upstream/8937212; hsa-mir-10400/Downstream/9881301;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/423826, chr8-CpG: 108/Downstream/65123

Upstream sequence

AAGATAAATCTGGTGAAAAGTAATTTTTTCTTTAAAAGTTACAATATACCTTTCACTGAATAAAATTTCTTAACCTTAAACAAATTTGCTTGCTTCCTAG

Downstream sequence

GCCACTAAAGAAAAGGAGAGTGGAAGTTACCTGATCCTCTATAGGCATGACTAATATGCCTCCAACTTTTAGTAATATTTTCATGTAGTTTTCATGGTCT