Basic Information
VIS ID
TVIS30000495
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr8
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
71434896/70522661 (Hg38)
End
71434896/70522661 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/6143404; hsa-mir-10400/Downstream/4025882;
Nearest TSS
ENST00000518652/Upstream/42038; ENST00000519358/Downstream/85117;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/118126, chr8-CpG: 131/Downstream/84784
Nearby gene
LOC101926892(No orient, 36974)
Upstream sequence
tgcaggctcaacttctggggctcaggcaatcttcttgtctcagcctcccaagaagctgagaccacaggcacgtgccaccatacccagctaatttttaaaa
Downstream sequence
aaatgtatttatagacatggggtctccccatgttgctcaggcaggactctaactcctggattctaggaatcctcctctcttggcctcccaaagtgccagg
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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