Basic Information
VIS ID
TVIS30000496
Fusion event
HIV-EFR3A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr8
Cytoband
q24.22
Reference genome
GRCh37/hg19
Start
132943766/131931519 (Hg38)
End
132943766/131931519 (Hg38)
Orient
+
Location type
Intronic
Target gene
EFR3A
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p
Nearest miRNA
hsa-mir-1204/Upstream/1923066; hsa-mir-10400/Downstream/1114962;
Nearest TSS
ENST00000518652/Upstream/27410; ENST00000520362/Downstream/6706;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/26706, chr8-CpG: 18/Downstream/197799
Upstream sequence
AGGTATATATAGTTATACCCCAAGACTGAGGGTAAATCCAGTCATTTTCTATTGTTACTATTTTGTTTGCATCTAGCTTTGTTTTTAGTAAAAGAACTAT
Downstream sequence
ATATTTTGTTTTCTGTAATGTTGATTTCTTACAATCTCAATATATATTAGACTGCTTAATATCAGGAACCAGTTGTATGAATATTTGCAAATTTCACAAT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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