Basic Information
VIS ID
TVIS30000498
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
145069685/143995517 (Hg38)
End
145069685/143995517 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA8D
Nearest miRNA
hsa-mir-1204/Upstream/50238; hsa-mir-10400/Downstream/61804;
Nearest TSS
ENST00000518652/Upstream/3343; ENST00000447830/Downstream/16897;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/4299, chr8-CpG: 22/Downstream/51213
Nearby gene
GRINA(+2102) ;
Upstream sequence
GTCTGACAACTGAGAGGTCTGCTATCTGCTGTGTCCCAGCCAGGGAGTGAAATGAGTCCGAGTACGTGGTGATGTGGCCAGGCAGATGAATCGGCACGGG
Downstream sequence
GTGCTCACATGGAGTCATGAGGCTGAACGCACCTGTAGCAATTGTGAGGCCACCACACTGATTCTTCAGGTagaaagaagaccagtcgctgacatctggg
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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