Basic Information
VIS ID
TVIS30000502
Fusion event
HIV-UBE2R2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
33858052/33858054 (Hg38)
End
33858052/33858054 (Hg38)
Orient
+
Location type
Intronic
Target gene
UBE2R2
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-7-5p ; hsa-mir-103a-3p ; hsa-mir-93-3p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-101-2/Upstream/390119; hsa-let-7a-1/Downstream/1750040;
Nearest TSS
ENST00000422679/Upstream/39259; ENST00000448245/Downstream/70781;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/39752, chr9-CpG: 75/Downstream/190587
Upstream sequence
TATTACAATAAGTTAGAAAGTCCTTATTACTGTAAGGCCAAGATGCTAACTTTATGAGGCACCAGTTTCTCCTAATGGAGAGTTTTTTCCCCCACCTCAC
Downstream sequence
AGAATAATCGCATATAATAAAAGCTAATTTACCCACTCCTGAAGGTAAAATACTTACTCACTTTCACATATCTCTATATAGTACATTACTGGATGATGTA
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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