Basic Information
VIS ID
TVIS30000504
Fusion event
HIV-ZCCHC7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr9
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
37311637/37311640 (Hg38)
End
37311637/37311640 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZCCHC7
miRNAs that regulate target gene
hsa-mir-365a-3p
Nearest miRNA
hsa-mir-101-2/Upstream/418109; hsa-let-7a-1/Downstream/3617370;
Nearest TSS
ENST00000422679/Upstream/27477; ENST00000497924/Downstream/14394;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/190652, chr9-CpG: 44/Downstream/110931
Upstream sequence
ctgggattacaggcatgagccacaacacctggccaatttttgtatttttagtagaggtgtggtttcactatgttggccaggctgatgtcgaactcctgac
Downstream sequence
ctcaggtgatctgcccgccttggcctcccaaagcgctggggttaacaggcgtgagctactgcgcccggccTTTTTACTTTTTTGATGCTAGAAAAATGCT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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