Basic Information
VIS ID
TVIS30000505
Fusion event
HIV-MIR6130 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
76940651/74325735 (Hg38)
End
76940651/74325735 (Hg38)
Location type
ncRNA_intronic
Target gene
MIR6130
Nearest miRNA
hsa-mir-101-2/Upstream/3515651; hsa-let-7a-1/Downstream/9644013;
Nearest TSS
ENST00000422679/Upstream/752120; ENST00000423681/Downstream/45796;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1959907, chr9-CpG: 43/Downstream/171127
Upstream sequence
attaactgggcgtggtggcatgcacctgtagtcccagctactcaggaggccaaagcaagagaatcacttgaacctgggaggtggaggttgcagtgagctg
Downstream sequence
agactgcgccactgcattccagcctggcaacagagcaagactccagcaaaaaaaaaaaaaaaaaGTCTTCTAGTAAAAAAGGAGAGAATTACTTTTTCTT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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