Basic Information
VIS ID
TVIS30000506
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr9
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
89430772/86815857 (Hg38)
End
89430772/86815857 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/2846000; hsa-let-7a-1/Downstream/1929979;
Nearest TSS
ENST00000422679/Upstream/183710; ENST00000415801/Downstream/131332;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/460868, chr9-CpG: 205/Downstream/129812
Nearby gene
GAS1(-128505) ;
Nearest cancer related gene
GAS1(TSG, -128505) ;
Upstream sequence
ttctttacatacagagcatgatcagctgaataattttcttgacgcaaagctgtcgatgtccaggatcgtcctctaggctgccaggaggagagggctgggg
Downstream sequence
ccgcagcacttcagaaagatggctgcactgtggtcgctggggcttcctttgaagtctgaaacccactcagcaagatctgagctgatgcttccctcacctc
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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