Basic Information
VIS ID
TVIS30000509
Fusion event
HIV-SLC25A25-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
130873925/128111646 (Hg38)
End
130873925/128111646 (Hg38)
Orient
+
Location type
ncRNA_exonic
Target gene
SLC25A25-AS1
Nearest miRNA
hsa-let-7a-1/Upstream/242151; hsa-mir-12126/Downstream/133075;
Nearest TSS
ENST00000422679/Upstream/7924; ENST00000443493/Downstream/7047;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/42976, chr9-CpG: 159/Downstream/15773
Upstream sequence
aggtgaaggttgcagtgagctgagattgtgccacactgcactccagcctgggctacagagcgagactatgtctcaaaaaaagaaaaaaaaaaaaaaagtg
Downstream sequence
agagtgaagccaggcacagcagtaactaactatacctgggtgctggggccagcgggacacgtgaggcatacatccaggtattgggatatttttccagtct
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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