Basic Information
VIS ID
TVIS30000516
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
9238998/9197035 (Hg38)
End
9238998/9197035 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-3155a/Upstream/3044758; hsa-mir-107/Downstream/2933725;
Nearest TSS
ENST00000439456/Upstream/226910; ENST00000458168/Downstream/78798;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/682896, chr10-CpG: 72/Downstream/210140
Nearby gene
LOC101928272(No orient, 331)
Upstream sequence
TTTTGCATTTTCTGTAATTTTTGTGTTAACCAGAGGATTTTGAGACCTGTGGCAGAGGCATTCTCTGCCTCAGGAGAAAGGTGGACATAGACTCAAATAA
Downstream sequence
AATAAGTCAATTGAATCTCTAAATAAGTTTTAAAATATGTACTAGGGATACTAACCTGAAATCCAAGATGCTTTCAATTTGCGAACACCACATATTTGAC
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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