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TVIS30000517
Basic Information
VIS ID
TVIS30000517
Fusion event
HIV-ZFAND4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr10
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
46137671/45642223 (Hg38)
End
46137671/45642223 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10G
Target gene
ZFAND4
miRNAs that regulate target gene
hsa-mir-7-5p
;
hsa-mir-182-5p
;
hsa-mir-573
;
hsa-mir-3616-5p
;
hsa-mir-340-5p
;
hsa-mir-5585-5p
;
hsa-mir-548ax
;
hsa-mir-548ao-5p
;
hsa-mir-4635
;
hsa-mir-4538
;
hsa-mir-3163
;
hsa-mir-4453
;
hsa-mir-562
;
hsa-mir-548n
;
hsa-mir-6516-5p
;
hsa-mir-455-3p
;
hsa-mir-650
;
hsa-mir-3612
;
hsa-mir-6499-3p
;
hsa-mir-2467-3p
;
hsa-mir-6086
;
hsa-mir-377-5p
;
hsa-mir-1827
;
hsa-mir-4487
;
hsa-mir-558
;
hsa-mir-3160-3p
;
hsa-mir-4257
;
hsa-mir-6500-3p
;
hsa-mir-3614-5p
;
hsa-mir-6511a-5p
;
hsa-mir-1910-3p
;
hsa-mir-34b-3p
;
hsa-mir-6513-5p
;
hsa-mir-887-5p
;
hsa-mir-3913-5p
;
hsa-mir-3122
;
hsa-mir-450a-1-3p
;
hsa-mir-6780a-5p
;
hsa-mir-6779-5p
;
hsa-mir-3689c
;
hsa-mir-3689b-3p
;
hsa-mir-3689a-3p
;
hsa-mir-30b-3p
;
hsa-mir-1273h-5p
;
hsa-mir-6788-5p
;
hsa-mir-30c-2-3p
;
hsa-mir-30c-1-3p
;
hsa-mir-7977
;
hsa-mir-654-5p
;
hsa-mir-541-3p
;
hsa-mir-6721-5p
;
hsa-mir-6799-5p
;
hsa-mir-6883-5p
;
hsa-mir-6785-5p
;
hsa-mir-4728-5p
;
hsa-mir-149-3p
;
hsa-mir-7106-5p
;
hsa-mir-1537-5p
;
hsa-mir-4738-5p
;
hsa-mir-4761-5p
;
hsa-mir-920
;
hsa-mir-6726-5p
;
hsa-mir-5591-5p
;
hsa-mir-4300
;
hsa-mir-6090
;
hsa-mir-6827-5p
;
hsa-mir-4329
;
hsa-mir-4324
;
hsa-mir-383-3p
;
hsa-mir-4293
;
hsa-mir-483-5p
;
hsa-mir-6807-5p
;
hsa-mir-4451
;
hsa-mir-98-5p
;
hsa-mir-4500
;
hsa-mir-4458
;
hsa-let-7i-5p
;
hsa-let-7g-5p
;
hsa-let-7f-5p
;
hsa-let-7e-5p
;
hsa-let-7d-5p
;
hsa-let-7c-5p
;
hsa-let-7b-5p
;
hsa-let-7a-5p
;
hsa-mir-6840-3p
;
hsa-mir-665
;
hsa-mir-4459
;
hsa-mir-6831-5p
;
hsa-mir-3927-3p
;
hsa-mir-5096
;
hsa-mir-197-3p
;
hsa-mir-4717-3p
Nearest miRNA
hsa-mir-1265/Upstream/478135; hsa-mir-107/Downstream/3343289;
Nearest TSS
ENST00000439456/Upstream/21296;
ENST00000485850/Downstream/7556;
Nearest CpG islands
None/Target,
chr10-CpG: 68/Upstream/47209
,
chr10-CpG: 78/Downstream/30006
Nearest cancer related gene
ZFAND4
(OG, No orient, 0)
Upstream sequence
TACACTATTCTCAGTTACCTTGCAATATTTTAACCTTAAATACTTCTGAGTTACTCTGTGGCATTTTAAGTATCTTTACTGAATACTGAAAGAAGTTTCT
Downstream sequence
GATTCAACATTACTGTCATGAAAAGACCTATTCTCTCATGGAATAGatacatatatacacacacatacatacacacatatatatatatataAAAGAACAA
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Sample Information
×
Sample name
ACH-2 Bulk Culture
Sample type
Cell line
Gender
Female
CpG Island Information
×
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