VISDB Viral Integration Site DataBase

VIS ID

TVIS30000520

Fusion event

HIV-TSPAN14 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HIV

Reference genome

Chromosome

chr10

Cytoband

q23.1

Reference genome

Start

End

82261228/80501472 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-34a-5p ; hsa-mir-96-5p ; hsa-mir-24-3p ; hsa-mir-769-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-603 ; hsa-mir-3941 ; hsa-mir-6741-3p ; hsa-mir-8485 ; hsa-mir-5011-5p ; hsa-mir-218-5p ; hsa-mir-6790-5p ; hsa-mir-4658 ; hsa-mir-4758-5p ; hsa-mir-1238-5p ; hsa-mir-526b-5p ; hsa-mir-1909-5p ; hsa-mir-3976 ; hsa-mir-512-3p ; hsa-mir-3123 ; hsa-mir-3925-5p ; hsa-mir-1264 ; hsa-mir-1277-5p ; hsa-mir-6083 ; hsa-mir-190a-3p ; hsa-mir-6834-3p ; hsa-mir-4729 ; hsa-mir-3689d ; hsa-mir-7641 ; hsa-mir-143-5p ; hsa-mir-3650 ; hsa-mir-5698 ; hsa-mir-4284 ; hsa-mir-6499-3p ; hsa-mir-4695-3p ; hsa-mir-2276-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-5096 ; hsa-mir-3187-3p ; hsa-mir-588 ; hsa-mir-548s ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-6823-5p ; hsa-mir-4524a-3p ; hsa-mir-4524b-3p ; hsa-mir-1827 ; hsa-mir-25-5p ; hsa-mir-4537 ; hsa-mir-4722-5p ; hsa-mir-5186 ; hsa-mir-6087 ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-940 ; hsa-mir-1225-3p ; hsa-mir-1228-3p ; hsa-mir-1233-3p ; hsa-mir-1281 ; hsa-mir-129-5p ; hsa-mir-1343-3p ; hsa-mir-23a-5p ; hsa-mir-23b-5p ; hsa-mir-377-3p ; hsa-mir-660-3p ; hsa-mir-6742-3p ; hsa-mir-6783-3p ; hsa-mir-6791-3p ; hsa-mir-6807-5p ; hsa-mir-6829-3p ; hsa-mir-6852-5p ; hsa-mir-8055 ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-1265/Upstream/4948919; hsa-mir-107/Downstream/5763222;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/46468, chr10-CpG: 56/Downstream/34273

Upstream sequence

gcctcagcctcccaaattgctgtgagccactgttctcagccTGAGGCTGGTATTAATGTGGGAAACAATACCCTTAGAAGTCAGACTTAGTAGTCAAGGT

Downstream sequence

GAGAGAAGGGGTGAGCTGTGAAGTGCAGTGTGGAGGAGAGAGGGGAGCTCCAGCAGTGGTTTTGTTGAGTGTCCTTAAGGTAGACTTTTCTCACCTGTCC