Basic Information
VIS ID
TVIS30000521
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr10
Cytoband
q23.31
Reference genome
GRCh37/hg19
Start
91330906/89571149 (Hg38)
End
91330906/89571149 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-1265/Upstream/507738; hsa-mir-107/Downstream/21598;
Nearest TSS
ENST00000439456/Upstream/14508; ENST00000454174/Downstream/40759;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/34981, chr10-CpG: 99/Downstream/73331
Nearby gene
PANK1(-8348) ;
Upstream sequence
AAAATTGAGCAGGAATAAAAACAACCCAACTTTTCTTAAAACAACCTTTAAGGATGGCAATGAATTTAGGAGACAAGTTTCTCATAATATAAGTTATAAT
Downstream sequence
GAGGCCAAATTGATAGGTTATTTAAAATATTAATTAGTTCTTGAAAGCAGGTTTACGTTCTGAAACCAAAAATTGTATTACCCTTACAtttttttatttt
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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