Basic Information
VIS ID
TVIS30000526
Fusion event
HIV-COPB1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr11
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
14508372/14486826 (Hg38)
End
14508372/14486826 (Hg38)
Orient
-
Location type
Intronic
Target gene
COPB1
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-130b-5p ; hsa-mir-195-5p ; hsa-mir-185-5p ; hsa-mir-26a-5p
Nearest miRNA
hsa-mir-210/Upstream/2323059; hsa-let-7a-2/Downstream/1482707;
Nearest TSS
ENST00000527297/Upstream/10951; ENST00000532740/Downstream/12840;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/105286, chr11-CpG: 43/Downstream/12524
Upstream sequence
TAAGAAATGGCTTTACTAGATAGGATGGTGTGAACAAAATAATTTTTACAGCTGTGCACTTATTTATTCATCCCATCATAATTTATATTTTTACTGTTTC
Downstream sequence
GTAAAAGGTTTTCTGATGACTTAAAATGTGTATGCTATACACaagtgaaagagaaaaagaaaatgtaaagtaacaaaagtaaggacacattaacccagta
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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