Basic Information
VIS ID
TVIS30000531
Fusion event
HIV-HNRNPUL2-BSCL2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr11
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
62487067/62719595 (Hg38)
End
62487067/62719595 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
HNRNPUL2-BSCL2
Nearest miRNA
hsa-mir-129-2/Upstream/152524; hsa-let-7a-2/Downstream/70220;
Nearest TSS
ENST00000527297/Upstream/9750; ENST00000530625/Downstream/4390;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/9586, chr11-CpG: 142/Downstream/6927
Upstream sequence
TGCTTCTCTCTGTTCATTCATTTATCTACAAGTGCTCACGACCATTAAGTTCCTCTTCAGATTTACATTTTAGATGTAGAGTGTCACTCCAGTTGCTAAG
Downstream sequence
AGACCTCAATAAGGTGTGCACTGACCAGGGATAAGATCTCTTTAACTTGTACAATTTTAGCCCACtgctatggtttgagttatgtcccaccaaagtacaa
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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