Basic Information
VIS ID
TVIS30000537
Fusion event
HIV-CCDC82 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr11
Cytoband
q21
Reference genome
GRCh37/hg19
Start
96106826/96373662 (Hg38)
End
96106826/96373662 (Hg38)
Orient
-
Location type
Intronic
Target gene
CCDC82
miRNAs that regulate target gene
hsa-mir-155-5p
Nearest miRNA
hsa-mir-10392/Upstream/32136; hsa-let-7a-2/Downstream/5146158;
Nearest TSS
ENST00000527297/Upstream/14380; ENST00000332349/Downstream/11328;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/449461, chr11-CpG: 75/Downstream/15710
Upstream sequence
ATAGATAGCACAAACAGCTTAATCATCCTAATTTTATAGCTTCCTCGATGACTTGTTTAGTCACGGAGCAAATCTCCATTTTCCAAACTTACTGGCTTCC
Downstream sequence
AATCCAAAGTGTCTACTTGTAATTTCAAATCTTTACTTCCCAAACTTAAGAAAACTGTTCAGAGaatattaaaataagtttaaaaaataaaaattatCCC
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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