Basic Information
VIS ID
TVIS30000541
Fusion event
HIV-LOC107984509 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr12
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
10362108/10209509 (Hg38)
End
10362108/10209509 (Hg38)
Location type
Intronic
Target gene
LOC107984509
Nearest miRNA
hsa-mir-1244-3/Upstream/969958; hsa-let-7i/Downstream/1902443;
Nearest TSS
ENST00000382841/Upstream/23112; ENST00000629504/Downstream/2949;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/97670, chr12-CpG: 55/Downstream/3261
Nearby gene
GABARAPL1(+3381) ;
Upstream sequence
gcgattctcctgcctcagcctcctaagtagctgggactataggtgcgcgccaccacacccggctaattttttgtatttttagtagagacggggtttcaca
Downstream sequence
gtgttagctaggatggtctcgatctcttgacctcgtgatccacccgcctcaggctcccaaaatgctgggattacaggcgtgagccaccgcgcccgtccTC
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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