Basic Information
VIS ID
TVIS30000545
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr12
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
75386048/74992268 (Hg38)
End
75386048/74992268 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/5407445; hsa-mir-1178/Downstream/4426989;
Nearest TSS
ENST00000382841/Upstream/453635; ENST00000549762/Downstream/28701;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/454169, chr12-CpG: 68/Downstream/215033
Nearby gene
KCNC2(-47810) ;
Upstream sequence
tggtgcaatattggatatggggagaatggttggggattattgcagcagacagcagaccacacagcaggaccagggcaatagaagtggagatagagagaag
Downstream sequence
actgacttaagaaatgcttaggaaataaagtcaatttacagtactgaactccatgttggagcaaaggagaaagcaatgtcacaaataattcctgattttc
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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