Basic Information
VIS ID
TVIS30000546
Fusion event
HIV-CRY1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
107401847/107008069 (Hg38)
End
107401847/107008069 (Hg38)
Orient
-
Location type
Intronic
Target gene
CRY1
miRNAs that regulate target gene
hsa-mir-324-5p
Nearest miRNA
hsa-let-7i/Upstream/2416353; hsa-mir-1178/Downstream/1627741;
Nearest TSS
ENST00000382841/Upstream/6218; ENST00000547679/Downstream/42290;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/20771, chr12-CpG: 121/Downstream/84765
Upstream sequence
atattattagcaaagctgaattgtagaaaacataccaggtttcagggcaggtaaacttgctaatactatttcactgttgaatcaaacagatttacctact
Downstream sequence
caatcataagcagcacctcccgcagtgtgggctttccctataaaacgtatcacatagaagaggagaatataacgtgtgctctctacaactaaaagaaaag
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate