Basic Information
VIS ID
TVIS30000554
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
86362766/85788631 (Hg38)
End
86362766/85788631 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1297/Upstream/8090515; hsa-mir-1267/Downstream/1830034;
Nearest TSS
ENST00000623511/Upstream/425030; ENST00000445967/Downstream/10755;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1908869, chr13-CpG: 121/Downstream/1882683
Nearby gene
SLITRK6(-4156) ;
Upstream sequence
TGTCAATATTTTATTCTATGAAATAAAACAAATTCCTAAAAGTTGGTATTGATAAATAGTAAATAAGTATTCAGAATTAGAAAAAAGAAACCAAACAATG
Downstream sequence
ACTTTCTGGTTGCCAGATGTACATGTTGTTCAGTCTGATAAATCAGTCAGCATTTGTAAAGCTGTATCTAAAATCTGCTAATATATCATTCTGAATAATC
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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