Basic Information
VIS ID
TVIS30000555
Fusion event
HIV-LOC105370302 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr13
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
88048817/87396562 (Hg38)
End
88048817/87396562 (Hg38)
Location type
Intronic
Target gene
LOC105370302
Nearest miRNA
hsa-mir-1297/Upstream/9698446; hsa-mir-1267/Downstream/222103;
Nearest TSS
ENST00000623511/Upstream/484644; ENST00000325089/Downstream/50673;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/3516800, chr13-CpG: 121/Downstream/274752
Nearby gene
MIR4500HG(-47425) ;
Upstream sequence
gctgacagccatcaaaataccaggactgactccacccaataaccccaatgagtttagaagcaaattcattcttataccttacacaaaaaagcagccctgt
Downstream sequence
ggaaccttgatcttttaagacctggaacagaaaaagtaggtaaaacacggtgtccagaattctgcccacaaaatctatgacaggggtgtccaatcttttg
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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