Basic Information
VIS ID
TVIS30000556
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr13
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
104909297/104256947 (Hg38)
End
104909297/104256947 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1297/Upstream/2210943; hsa-mir-1267/Downstream/3274224;
Nearest TSS
ENST00000623511/Upstream/831747; ENST00000640578/Downstream/1208920;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1410534, chr13-CpG: 29/Downstream/2236113
Nearby gene
MIR548AS(No orient, 974449)
Upstream sequence
TGTGTGACATCCAATGAGCCATGAAAGGAACTGAGTGCGTTCACTGCCCTGGAGAAATTCCAGCAGCTTCTCCGCATGAGATCAGTATATAACAGATGGG
Downstream sequence
ACCAGGGTGACTGATTTAATTAGAATATTTTAATAGCAGAATTGTGAACATTACACAGCTCTATCAGGAAGAAGGCCATTAAATTTACTAAAGTAATTGT
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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