Basic Information
VIS ID
TVIS30000557
Fusion event
HIV-TMCO3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh37/hg19
Start
114194056/113539741 (Hg38)
End
114194056/113539741 (Hg38)
Orient
-
Location type
Intronic
Target gene
TMCO3
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-30c-5p
Nearest miRNA
hsa-mir-1267/Upstream/276742; hsa-mir-4502/Downstream/704764;
Nearest TSS
ENST00000623511/Upstream/19195; ENST00000491166/Downstream/6014;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/6587, chr13-CpG: 84/Downstream/1653
Upstream sequence
ATTTGGATTGCTAGTAGCCAGAAACTGTTTTCTGCTTTATAGAGCGCAGAGAAATCTTATTTTATTATACTGtttcttctgtccagcttttcctttaggc
Downstream sequence
tcagggtacgtgtgtgggtctgtgacacgggtagtgagtgtcacagggctttggtgtacagatgattttgccacccaggtaataagcataggaccctcgg
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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