Basic Information
VIS ID
TVIS30000558
Fusion event
HIV-TMCO3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh37/hg19
Start
114194174/113539859 (Hg38)
End
114194174/113539859 (Hg38)
Orient
-
Location type
Intronic
Target gene
TMCO3
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-30c-5p
Nearest miRNA
hsa-mir-1267/Upstream/276860; hsa-mir-4502/Downstream/704646;
Nearest TSS
ENST00000623511/Upstream/19313; ENST00000491166/Downstream/5896;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/6705, chr13-CpG: 84/Downstream/1535
Upstream sequence
tctgtgacacgggtagtgagtgtcacagggctttggtgtacagatgattttgccacccaggtaataagcataggaccctcggcagtgttttaatcctcac
Downstream sequence
cctcctcctcccagcctccaccttgcccaggccccagtgtctcttgctcccgtctttgtgtccacgtgtactcggtgttgagctcccacttgtaagtgag
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
Curate