Basic Information
VIS ID
TVIS30000562
Fusion event
HIV-LINC00911 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr14
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
85871877/85405533 (Hg38)
End
85871877/85405533 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC00911
Nearest miRNA
hsa-mir-1260a/Upstream/8139243; hsa-mir-1185-1/Downstream/8542693;
Nearest TSS
ENST00000550708/Upstream/11585; ENST00000553678/Downstream/111401;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/3871443, chr14-CpG: 45/Downstream/124617
Upstream sequence
TGACAAAGGCTTGAACTAGTGGCAGTGGGAAAATCAAGGCAGGAAAGGGTTTTCAGAGGATAATTGATCTGTTAAATGTGGCTGTGGATGAGAAAGAATG
Downstream sequence
TATCAACAATAACCAGGACTGTCTAGCTCTGGTGATTAGAAGGAAGGTAATGTATTGATGGAGACACAAGACATAAAAGGAAGAGCACATATCTGGAGGA
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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