Basic Information
VIS ID
TVIS30000564
Fusion event
HIV-LOC105370651 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
98252471/97786134 (Hg38)
End
98252471/97786134 (Hg38)
Location type
Intronic
Target gene
LOC105370651
Nearest miRNA
hsa-mir-1260a/Upstream/2648148; hsa-mir-1185-1/Downstream/2323285;
Nearest TSS
ENST00000550708/Upstream/22145; ENST00000557072/Downstream/3122;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/566525, chr14-CpG: 53/Downstream/1331934
Nearby gene
LINC02291(-99476) ;
Upstream sequence
aatgcctagttttaaagcttcagcggacaggctaactcttgttgtgatctaacgaagttggtgactttaaactaaagcctaacgctcatttgccattctg
Downstream sequence
aaaatcctacggaccttaagaattaggctaaatctactctacctatgcatcataaatggaacaacaaagcccagaaagtaaatctgttgacagcatggtt
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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