Basic Information
VIS ID
TVIS30000567
Fusion event
HIV-STARD9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr15
Cytoband
q15.2
Reference genome
GRCh37/hg19
Start
42913210/42621012 (Hg38)
End
42913210/42621012 (Hg38)
Orient
+
Location type
Intronic
Target gene
STARD9
Nearest miRNA
hsa-mir-1233-1/Upstream/421346; hsa-mir-10393/Downstream/1172647;
Nearest TSS
ENST00000557528/Upstream/45342; ENST00000568493/Downstream/8830;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/39354, chr15-CpG: 91/Downstream/115505
Upstream sequence
cctggttaattttgtatttttagtagagatggggtttcaccatgttggccagtctggtctcgaactcctgacctcaagtgatccacccgcctcagcctcc
Downstream sequence
caaagtgctgggattataggggtgagccaccacctggtatacatgtcccttaatttggattgtccagtgtctcctcatgattacattcagattatgtatc
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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