Basic Information
VIS ID
TVIS30000568
Fusion event
HIV-TTBK2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26912621
Virus Sequence
Virus name
HIV
Reference genome
K03455.1
Host Sequence
Chromosome
chr15
Cytoband
q15.2
Reference genome
GRCh37/hg19
Start
43127545/42835347 (Hg38)
End
43127545/42835347 (Hg38)
Orient
-
Location type
Intronic
Target gene
TTBK2
Nearest miRNA
hsa-mir-1233-1/Upstream/635681; hsa-mir-10393/Downstream/958312;
Nearest TSS
ENST00000557528/Upstream/94599; ENST00000570109/Downstream/72928;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/97926, chr15-CpG: 88/Downstream/84871
Upstream sequence
gaactcactgaccaatcttaacctcactgaaagacagacaaccagatactgcctcctgatgtgattcaagaggaagcatacaacccacctctgaagtatc
Downstream sequence
cttgcaaagtaaaactggaatcttatataatcatcaatttatagaaaatacaggggacagaaatacatattaaagacaaccacagggaaacaaccagcaa
Reference
Sunshine, S., et al. HIV Integration Site Analysis of Cellular Models of HIV Latency with a Probe-Enriched Next-Generation Sequencing Assay. J Virol,2016, 90(9): 4511-4519.
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